Cellwall Database
Introduction
Cell Wall Navigator (CWN) is an integrated database and mining tool for protein families involved in plant cell wall metabolism. Detailed information about this resource is available on its ReadMe page and the associated publication in Plant Physiol: 136, 3003-3008.
Update
Incorporation of expression data from 1309 Affymetric chips.
1 Monosaccharide activation and interconversion
1.1 Sugar 1-kinases (S1K) [ Genbank; Fasta; Structure ]
1.2 Nucleotide-sugar pyrophosphorylases
1.2.1 GDP-mannose pyrophosphorylase (GMP) [ Genbank; Fasta; Structure ]
1.2.2 UDP-glucose pyrophosphorylases (UGP) [ Genbank; Fasta; Structure ]
1.3 Nucleotide-sugar interconversion enzymes
1.3.1 NAD dependent epimerase/dehydratase superfamily (NSI) [ Genbank; Fasta; Structure ]
1.3.1.1 UDP-D-glucose 4-epimerases (UGE)
1.3.1.2 UDP-D-galacturonic acid 4-epimerases (GAE)
1.3.1.3 UDP-L-rhamnose synthases (RHM)
1.3.1.4 UDP-D-apiose/xylose synthases (UXS, AUD)
1.3.1.5 UDP-D-xylose 4-epimerase (UXE)
1.3.1.6 GDP-D-mannose 3,5-epimerase (GME)
1.3.1.7 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER)
1.3.1.8 GDP-D-mannose-4,6-dehydratase (GMD)
1.3.2 Nucleotide sugar dehydrogenase superfamily (UGD) [ Genbank; Fasta; Structure ]
2 Polysaccharide synthesis
2.1 Cellulose and Galactomannan
2.1.1 Cellulose and beta-mannan synthase-like (CSL) [ Genbank; Fasta; Structure ]
2.2 Hemicellulose
2.2.1 Reversibly glycosylated polypeptides (RGP) [ Genbank; Fasta; Structure ]
2.2.2 Xyloglucan galactosyltransferases (XGT) [ Genbank; Fasta; Structure ]
2.2.3 Xyloglucan fucosyltransferase (XFT) [ Genbank; Fasta; Structure ]
2.2.4 Xyloglucan xylosyltransferases and galactomannan galactosyltransferases (XXT) [ Genbank; Fasta; Structure ]
2.3 Callose
2.3.1 Glucan synthase-like (GSL) [ Genbank; Fasta; Structure ]
2.4 Other glycosyl transferases
2.4.1 Glycosyl transferases (pectin bios.) (GT8) [ Genbank; Fasta; Structure ]
3 Reassembly
3.1 Cell Expansion
3.1.1 Expansins (EXP) [ Genbank; Fasta; Structure ]
3.1.2 Yieldins (GH18) [ Genbank; Fasta; Structure ]
3.2 Hemicellulose reassembly
3.2.1 Xyloglucan endotransglycosylases/hydrolases (XTH) [ Genbank; Fasta; Structure ]
3.3 Glycoside hydrolases
3.3.1 Beta-galactosidases (BGAL) [ Genbank; Fasta; Structure ]
3.3.2 Glycoside hydrolases 9 (GH9) [ Genbank; Fasta; Structure ]
3.3.3 Glycoside hydrolases 17 (GH17) [ Genbank; Fasta; Structure ]
3.3.4 Polygalacturonases (GH28) [ Genbank; Fasta; Structure ]
3.3.5 Glycoside Hydrolase Family 10 (GH10) [ Genbank; Fasta; Structure ]
3.3.6 Glycoside Hydrolase Family 43 (GH43) [ Genbank; Fasta; Structure ]
3.3.7 Glycoside Hydrolase Family 51 (GH51) [ Genbank; Fasta; Structure ]
3.4 Lyases
3.4.1 Pectate and pectin lyases (PL1) [ Genbank; Fasta; Structure ]
3.4.2 Rhamnogalacturonan I lyases (PL4) [ Genbank; Fasta; Structure ]
3.5 Esterases
3.5.1 Pectin methyl esterases (PME) [ Genbank; Fasta; Structure ]
3.5.2 Pectin acetylesterases (PAE) [ Genbank; Fasta; Structure ]
3.5.3 Feruloyl esterases (FE) [ Genbank; Fasta; Structure ]
4 Structural proteins
4.1 Hydroxyproline-rich glycoproteins (HRGP) [ Genbank; Fasta; Structure ]
4.2 Leucine-rich repeat extensins (LRX) [ Genbank; Fasta; Structure ]
4.3 Proline-rich proteins (PRP) [ Genbank; Fasta; Structure ]
4.4 Glycine-rich proteins (GRP) [ Genbank; Fasta; Structure ]
4.5 Arabinogalactan proteins (AGP) [ Genbank; Fasta; Structure ]
5 Glycoprotein glycosyltransferases
5.1 Glycoprotein fucosyltransferases (GFT) [ Genbank; Fasta; Structure ]
5.2 Glycosyl transferases 21A (GT31a) [ Genbank; Fasta; Structure ]
5.3 Glycosyl transferases 31B (GT31b) [ Genbank; Fasta; Structure ]